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Gaul Lab - Publications

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Large-scale analysis of Drosophila core promoter function using synthetic promoters.
Qi Z, Jung C, Bandilla P, Ludwig C, Heron M, Kiesel AS, Mariam M, Philippou-Massier J, Nikolov M, Renna A, Schnepf M, Unnerstall U, Stefano C, Mühling B, Gompel N, Soeding J and Gaul U.
Molecular Systems Biology 2022, Feb;18(2):e9816. PubMed


The cAMP effector PKA mediates Moody GPCR signaling in Drosophila blood-brain barrier formation and maturation.
Li X, Fetter R, Schwabe T, Jung C, Liu L, Steller H, Gaul U.
Elife. 2021 Aug 12;10:e68275. PubMed


A sensitive mNeonGreen reporter system to measure transcriptional dynamics in Drosophila development.
Ceolin S, Hanf M, Bozek M, Storti AE, Gompel N, Unnerstall U, Jung C, Gaul U.
Commun Biol. 2020 Nov 12;3(1):663. doi: 10.1038/s42003-020-01375-5. PubMed

Transcription Factor Binding Affinities and DNA Shape Readout.
Schnepf M, von Reutern M, Ludwig C, Jung C, Gaul U.
iScience. 2020 Oct 15;23(11):101694. doi: 10.1016/j.isci.2020.101694. PubMed

Sensitive Automated Measurement of Histone-DNA Affinities in Nucleosomes.
Schnepf M, Ludwig C, Bandilla P, Ceolin S, Unnerstall U, Jung C, Gaul U.
iScience. 2020 Feb 21;23(2):100824. doi: 10.1016/j.isci.2020.100824. PubMed



ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the Drosophila blastoderm.
Bozek M, Cortini R, Storti AE, Unnerstall U, Gaul U, Gompel N.
Genome Res. 2019 May;29(5):771-783. doi: 10.1101/gr.242362.118. PubMed

High Sensitivity Measurement of Transcription Factor-DNA Binding Affinities by Competitive Titration Using Fluorescence Microscopy.
Jung C, Schnepf M, Bandilla P, Unnerstall U, Gaul U.
J Vis Exp. 2019 Feb 07 link



True equilibrium measurement of transcription factor-DNA binding affinities using automated polarization microscopy.
Jung C, Bandilla P, von Reutern M, Schnepf M, Rieder S, Unnerstall U, Gaul U.
Nat Commun. 2018 Apr 23;9(1):1605. doi: 10.1038/s41467-018-03977-4. PubMed



The glia of the adult Drosophila nervous system.
Kremer MC, Jung C, Batelli S, Rubin GM, Gaul U.
Glia. 2017 Apr;65(4):606-638. doi: 10.1002/glia.23115. Epub 2017 Jan 30. PubMed 

Dynamic analysis of the mesenchymal-epithelial transition of blood-brain barrier forming glia in Drosophila.
Schwabe T, Li X, Gaul U.
Biol Open. 2017 Feb 15;6(2):232-243. doi: 10.1242/bio.020669. PubMed



A Combination of CRISPR/Cas9 and Standardized RNAi as a Versatile Platform for the Characterization of Gene Function.
Wissel S, Kieser A, Yasugi T, Duchek P, Roitinger E, Gokcezade J, Steinmann V, Gaul U, Mechtler K, Förstemann K, Knoblich JA, Neumüller RA.
G3 (Bethesda). 2016 Aug 9;6(8):2467-78. doi: 10.1534/g3.116.028571. PubMed

Single-Molecule Imaging in Living Drosophila Embryos with Reflected Light-Sheet Microscopy.
Greiss F, Deligiannaki M, Jung C, Gaul U, Braun D.
Biophys J. 2016 Feb 23;110(4):939-46. doi: 10.1016/j.bpj.2015.12.035. PubMed



Pasiflora proteins are novel core components of the septate junction.
Deligiannaki M, Casper AL, Jung C, Gaul U.
Development. 2015 Sep 1;142(17):3046-57. doi: 10.1242/dev.119412. PubMed



Efficient chromosomal gene modification with CRISPR/cas9 and PCR-based homologous recombination donors in cultured Drosophila cells.
Böttcher R, Hollmann M, Merk K, Nitschko V, Obermaier C, Philippou-Massier J, Wieland I, Gaul U, Förstemann K.
Nucleic Acids Res. 2014 Jun;42(11):e89. doi: 10.1093/nar/gku289. Epub 2014 Apr 19. PubMed



A beta-herpesvirus with fluorescent capsids to study transport in living cells.
Bosse JB, Bauerfeind R, Popilka L, Marcinowski L, Taeglich M, Jung C, Striebinger H, von Einem J, Gaul U, Walther P, Koszinowski UH, Ruzsics Z.
PLoS One. 2012;7(7):e40585. doi: 10.1371/journal.pone.0040585. Epub 2012 Jul 11. PubMed



How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation.
Schroeder MD, Greer C, Gaul U.
Development. 2011 Jul;138(14):3067-78. doi: 10.1242/dev.062141. PubMed



Decoding transcription and microRNA-mediated translation control in Drosophila development.
Gaul U
Biol Chem. 2010 Jul;391(7):767-70. doi: 10.1515/BC.2010.090. Review. PubMed



miR-184 has multiple roles in Drosophila female germline development.
Iovino N, Pane A, Gaul U.
Dev Cell. 2009 Jul;17(1):123-33. doi: 10.1016/j.devcel.2009.06.008. PubMed

The Drosophila afadin homologue Canoe regulates linkage of the actin cytoskeleton to adherens junctions during apical constriction.
Sawyer JK, Harris NJ, Slep KC, Gaul U, Peifer M.
J Cell Biol. 2009 Jul 13;186(1):57-73. doi: 10.1083/jcb.200904001. PubMed



Six-microns-under acts upstream of Draper in the glial phagocytosis of apoptotic neurons.
Kurant E, Axelrod S, Leaman D, Gaul U.
Cell. 2008 May 2;133(3):498-509. doi: 10.1016/j.cell.2008.02.052. PubMed

Predicting expression patterns from regulatory sequence in Drosophila segmentation.
Segal E, Raveh-Sadka T, Schroeder M, Unnerstall U, Gaul U.
Nature. 2008 Jan 31;451(7178):535-40. doi: 10.1038/nature06496. Epub 2008 Jan 2. PubMed



The role of site accessibility in microRNA target recognition.
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E.
Nat Genet. 2007 Oct;39(10):1278-84. Epub 2007 Sep 23. PubMed



moody encodes two GPCRs that regulate cocaine behaviors and blood-brain barrier permeability in Drosophila.
Bainton RJ, Tsai LT, Schwabe T, DeSalvo M, Gaul U, Heberlein U.
Cell. 2005 Oct 7;123(1):145-56. PubMed

GPCR signaling is required for blood-brain barrier formation in drosophila.
Schwabe T, Bainton RJ, Fetter RD, Heberlein U, Gaul U.
Cell. 2005 Oct 7;123(1):133-44. PubMed

Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development.
Leaman D, Chen PY, Fak J, Yalcin A, Pearce M, Unnerstall U, Marks DS, Sander C, Tuschl T, Gaul U.
Cell. 2005 Jul 1;121(7):1097-108. PubMed



Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.
Sinha S, Schroeder MD, Unnerstall U, Gaul U, Siggia ED.
BMC Bioinformatics. 2004 Sep 9;5:129. PubMed

Transcriptional control in the segmentation gene network of Drosophila.
Schroeder MD, Pearce M, Fak J, Fan H, Unnerstall U, Emberly E, Rajewsky N, Siggia ED, Gaul U.
PLoS Biol. 2004 Sep;2(9):E271. Epub 2004 Aug 31. PubMed



MicroRNA targets in Drosophila.
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS.
Genome Biol. 2003;5(1):R1. Epub 2003 Dec 12. PubMed

The AF-6 homolog canoe acts as a Rap1 effector during dorsal closure of the Drosophila embryo.
Boettner B, Harjes P, Ishimaru S, Heke M, Fan HQ, Qin Y, Van Aelst L, Gaul U.
Genetics. 2003 Sep;165(1):159-69. PubMed



Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
Rajewsky N, Vergassola M, Gaul U, Siggia ED.
BMC Bioinformatics. 2002 Oct 24;3:30. Epub 2002 Oct 24. PubMed

The establishment of retinal connectivity.
Gaul U.
Results Probl Cell Differ. 2002;37:205-18. Review. No abstract available. PubMed



Dpp and Hedgehog mediate neuron-glia interactions in Drosophila eye development by promoting the proliferation and motility of subretinal glia.
Rangarajan R, Courvoisier H, Gaul U.
Mech Dev. 2001 Oct;108(1-2):93-103. PubMed

A novel muscle LIM-only protein is generated from the paxillin gene locus in Drosophila.
Yagi R, Ishimaru S, Yano H, Gaul U, Hanafusa H, Sabe H.
EMBO Rep. 2001 Sep;2(9):814-20. Epub 2001 Aug 23. PubMed


2000 and before

The Drosophila gene abstrakt, required for visual system development, encodes a putative RNA helicase of the DEAD box protein family.
Schmucker D, Vorbrüggen G, Yeghiayan P, Fan HQ, Jäckle H, Gaul U.
Mech Dev. 2000 Mar 1;91(1-2):189-96. PubMed

Migration and function of glia in the developing Drosophila eye.
Rangarajan R, Gong Q, Gaul U.
Development. 1999 Aug;126(15):3285-92. PubMed

A methionine aminopeptidase and putative regulator of translation initiation is required for cell growth and patterning in Drosophila.
Cutforth T, Gaul U.
Mech Dev. 1999 Apr;82(1-2):23-8. PubMed

In vivo functional analysis of Drosophila Gap1: involvement of Ca2+ and IP4 regulation.
Powe AC Jr, Strathdee D, Cutforth T, D'Souza-Correia T, Gaines P, Thackeray J, Carlson J, Gaul U.
Mech Dev. 1999 Mar;81(1-2):89-101. PubMed

The netrin receptor frazzled is required in the target for establishment of retinal projections in the Drosophila visual system.
Gong Q, Rangarajan R, Seeger M, Gaul U.
Development. 1999 Apr;126(7):1451-6. PubMed

Activation of the Drosophila C3G leads to cell fate changes and overproliferation during development, mediated by the RAS-MAPK pathway and RAP1.
Ishimaru S, Williams R, Clark E, Hanafusa H, Gaul U.
EMBO J. 1999 Jan 4;18(1):145-55. PubMed

Neural development: how cadherins zipper up neural circuits.
Martinek S, Gaul U.
Curr Biol. 1997 Nov 1;7(11):R712-5. Review. PubMed

Genetic analysis of the larval optic nerve projection in Drosophila.
Schmucker D, Jäckle H, Gaul U.
Development. 1997 Mar;124(5):937-48. PubMed

The genetics of visual system development in Drosophila: specification, connectivity and asymmetry.
Cutforth T, Gaul U.
Curr Opin Neurobiol. 1997 Feb;7(1):48-54. Review. PubMed

The spalt-related gene of Drosophila melanogaster is a member of an ancient gene family, defined by the adjacent, region-specific homeotic gene spalt.
Barrio R, Shea MJ, Carulli J, Lipkow K, Gaul U, Frommer G, Schuh R, Jäckle H, Kafatos FC.
Dev Genes Evol. 1996 Dec;206(5):315-25. doi: 10.1007/s004270050058. PubMed

Identification of ras targets using a genetic approach.
Gaul U
, Chang H, Choi T, Karim F, Rubin GM.
Ciba Found Symp. 1993;176:85-92; discussion 92-5. Review. PubMed

A putative Ras GTPase activating protein acts as a negative regulator of signaling by the Sevenless receptor tyrosine kinase.
Gaul U
, Mardon G, Rubin GM.
Cell. 1992 Mar 20;68(6):1007-19. PubMed

Signal transduction pathway initiated by activation of the sevenless tyrosine kinase receptor.
Simon MA, Carthew RW, Fortini ME, Gaul U, Mardon G, Rubin GM.
Cold Spring Harb Symp Quant Biol. 1992;57:375-80. Review. No abstract available. PubMed

Regulation of Krüppel expression in the anlage of the Malpighian tubules in the Drosophila embryo.
Gaul U
, Weigel D.
Mech Dev. 1990 Dec;33(1):57-67. PubMed

Role of gap genes in early Drosophila development.
Gaul U
, Jäckle H.
Adv Genet. 1990;27:239-75. Review. No abstract available. PubMed

Analysis of maternal effect mutant combinations elucidates regulation and function of the overlap of hunchback and Krüppel gene expression in the Drosophila blastoderm embryo.
Gaul U
, Jäckle H.
Development. 1989 Nov;107(3):651-62. PubMed

Single amino acid exchanges in the finger domain impair the function of the Drosophila gene Krüppel (Kr).
Gaul U
, Redemann N, Jäckle H.
Proc Natl Acad Sci U S A. 1989 Jun;86(12):4599-603. PubMed

Disruption of a putative Cys-zinc interaction eliminates the biological activity of the Krüppel finger protein.
Redemann N, Gaul U, Jäckle H.
Nature. 1988 Mar 3;332(6159):90-2. PubMed

Pole region-dependent repression of the Drosophila gap gene Krüppel by maternal gene products.
Gaul U, Jäckle H.
Cell. 1987 Nov 20;51(4):549-55. PubMed

Analysis of Krüppel protein distribution during early Drosophila development reveals posttranscriptional regulation.
Gaul U, Seifert E, Schuh R, Jäckle H.
Cell. 1987 Aug 14;50(4):639-47. PubMed

A conserved family of nuclear proteins containing structural elements of the finger protein encoded by Krüppel, a Drosophila segmentation gene.
Schuh R, Aicher W, Gaul U, Cote S, Preiss A, Maier D, Seifert E, Nauber U, Schröder C, Kemler R, et al.
Cell. 1986 Dec 26;47(6):1025-32. PubMed