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Simon Mages - Publications

Preprints   |   2023   |   2022   |   2017   |   2016   |   2015 and before 



SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data.
Zhang D, Segerstolpe A, Slyper M, Waldman J, Murray E, Cohen O, Ashenberg O, Abravanel D, Jané-Valbuena J, Mages S, Lako A, Helvie K, Rozenblatt-Rosen O, Rodig S, Chen F, Wagle N, Regev A and Klughammer J.
bioRxiv, 2022, doi: 10.1101/2022.11.25.517982.

Integrative single cell and spatial transcriptomics of colorectal cancer reveals multicellular functional units that support tumor progression.
Avraham-Davidi I, Mages S, Klughammer J, Moriel N, Imada S, Hofree M, Murray E, Chen J, Pelka K, Mehta A, Boland GM, Delorey T, Caplan L, Dionne D, Tirosh I, Hacohen N, Chen F, Yilmaz O, Roper J, Rozenblatt-Rosen O, Nitzan M and Regev A.
bioRxiv, 2022, doi: 10.1101/2022.10.02.508492.


Emergence of division of labor in tissues through cell interactions and spatial cues.
Adler M, Moriel N, Goeva A, Avraham-Davidi I, Mages S, Adams TS, Kaminski N, Macosko EZ, Regev A, Medzhitov R, Nitzan M.
Cell Rep. 2023 May 30;42(5):112412. doi: 10.1016/j.celrep.2023.112412. Epub 2023 Apr 21. PMID: 37086403 Free PMC article. PubMed

TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics.
Mages S, Moriel N, Avraham-Davidi I, Murray E, Watter J, Chen F, Rozenblatt-Rosen O, Klughammer J, Regev A, Nitzan M.
Nat Biotechnol. 2023 Feb 16:10.1038/s41587-023-01657-3. doi: 10.1038/s41587-023-01657-3. PMID: 36797494 PubMed



SM-Omics is an automated platform for high-throughput spatial multi-omics.
Vickovic S, Lötstedt B, Klughammer J, Mages S, Segerstolpe Å, Rozenblatt-Rosen O, Regev A.
Nat Commun. 2022 Feb 10;13(1):795. PubMed



Lattice QCD on nonorientable manifolds.
Mages S, Toth BC, Borsanyi S, Fodor Z, Katz SD and Szabo KK.
Phys. Rev., vol. D95, p. 094512, 2017, doi: 10.1103/PhysRevD.95.094512.

Lattice QCD thermodynamics up to the perturbative regime.
Bellwied R, Borsanyi S, Fodor Z, Gunther J, Kampert K-H, Katz SD, Kawanai T, Kovacs TG, Mages SW, Pasztor A, Pittler F, Ratti C, Redondo J, Ringwald A and Szabo KK.
Nucl. Phys., vol. A967, pp. 732-735, 2017, doi: 10.1016/j.nuclphysa.2017.06.017.



Calculation of the axion mass based on high-temperature lattice quantum chromodynamics.
Borsanyi S, Fodor Z, Guenther J, Kampert KH, Katz SD, Kawanai T, Kovacs TG, Mages SW, Pasztor A, Pittler F, Redondo J, Ringwald A, Szabo KK.
Nature. 2016 Nov 3;539(7627):69-71. doi: 10.1038/nature20115. PMID: 27808190 PubMed

Axion cosmology, lattice QCD and the dilute instanton gas.
Borsanyi S, Dierigl M, Fodor Z, Katz SD, Mages SW, Nogradi D, Redondo J, Ringwald A and Szabo KK.
Phys. Lett., vol. B752, pp. 175-181, 2016, doi: 10.1016/j.physletb.2015.11.020.

Viscosity of the pure SU(3) gauge theory revisited.
Borsányi S, Fodor Z, Giordano M, Katz SD, Mages S, Schäfer A, Tóth B and Pásztor A.
PoS, vol. LATTICE2016, p. 073, 2016, doi: 10.22323/1.256.0073.

Pure SU(3) Topological Susceptibility at Finite Temperature with the Wilson Flow.
Borsanyi S, Fodor Z, Katz SD, Mages S, Nogradi D and Szabo KK.
PoS, vol. LATTICE2015, p. 164, 2016, doi: 10.22323/1.251.0164.


2015 and before

Shear Viscosity from Lattice QCD.
Mages SW, Borsanyi S, Fodor Z, Schafer A and Szabo K.
PoS, vol. LATTICE2014, p. 232, 2015, doi: 10.22323/1.214.0232.

QPACE 2 and Domain Decomposition on the Intel Xeon Phi.
Arts P, Bloch J, Georg P, Glassle B, Heybrock S, Komatsubara Y, Lohmayer R, Mages S, Mendl B, Meyer N, Parcianello A, Pleiter D, Rappl F, Rossi M, Solbrig S, Tecchiolli G, Wettig T and Zanier G.
PoS, vol. LATTICE2014, p. 021, 2015, doi: 10.22323/1.214.0021.

Charmonium spectral functions from 2+1 flavour lattice QCD.
Borsanyi S, Durr S, Fodor Z, Hoelbling C, Katz SD, Krieg S, Mages S, Nogradi D, Pasztor A, Schafer A, Szabo KK, Toth BC and Trombitas N.
JHEP, vol. 04, p. 132, 2014, doi: 10.1007/JHEP04(2014)132.